NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1011016

Scaffold Ga0207193_1011016


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1011016 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12671
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001396Metagenome / Metatranscriptome705Y
F004761Metagenome / Metatranscriptome424Y
F032258Metagenome / Metatranscriptome180Y
F041738Metagenome / Metatranscriptome159Y
F066605Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0207193_101101614F001396N/AVDSVWVPLAVAVITGPVVVVLQKLRKENTDQHAEGRILLKTIGNKVDKIGSKLDHHIGWHEGQEEQ
Ga0207193_101101615F066605N/AMKEFRCLECLTTFESDELPRRGSICFKCHIKSVRLGFTYGQDDFHGPTVKERADEQVRVAKEAGITAEPIGSRWV
Ga0207193_101101617F041738N/AMPNRKVVIMKKVKDFIYNNPVRVAAFVSSAVAIIVAFVVPEAPTEPAIAFVLSALGLGEFAQRAENKKTDEALFTEIPE
Ga0207193_10110166F004761AGGAMSITLSTLRTQVRSMADLDEVDLPNTIIDQFAREGFQRIYSLERRWPYLQSSYSFNTIVNKREYEISSIGDIREIISVLDSSTSGNRLTLIDYNQAEDIWLGNTDVPSRPYFYSFWNKKIQLWAKPDAIYPITVRAFRNPVYTWLDDVSEDIDIDEWFHALLPYFVLARVYQRQEDAQLSQMYMNSFEEGVALARRDLMKASSAQPVIMSAGRQYPTMRRWLQTLGGTLGQ
Ga0207193_10110167F032258N/AMKNAVPAQSYYGTPVSGLRLAPTAGAKIASPSAPYVGRNRCTANEDTCEGPKARGTDYCIGHLRSQGQSK
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