NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1007335

Scaffold Ga0207193_1007335


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1007335 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16468
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001299Metagenome / Metatranscriptome727Y
F015856Metagenome / Metatranscriptome251Y
F030356Metagenome185Y
F079653Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_10073353F079653N/AMTHPELAETETKFICSIEQNTLILCERHAKVFELAALAAGTPHTVYEMDDEDSEGLKCHACDLQAELTRPRIILPGELH
Ga0207193_10073354F030356AGAAGGMLDIKQVIVDDINQNNKTNARFVRMKNQMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVIAKGLMPNGEVNFDFVADNEEDTVAARQATNMVSKVINSMNDPHFVLERWIMDACMHKNGMMMIKPVRENITRYIETEGTLDQLKAFEIQASEAGLTALRQSRRRSTVDMIKVMEEVTQLLGDEQQSFAEDMIGRTVESFKTLPEDTEFPMGADENTLMAEFNEGQNAVLQDAIKRNTIYKAKYKLTGYNINIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEAAELYPGINDNLEAFREHAEYNQNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPDSRQVSIVTVWNKYDIDGDGELELVELIYSGSYIISAREVEFIPVANMVPKPLPGNFYGMSIAESVIPMQEYNTAAARAEIQLGLLTATPRIGVKPDRVDFEMMQDGEAAIFILDSKFNPATDVYPMPPPSGNLQFLEVAMNRIQQDTMAMVGMTTPQDVFNPEVMAAGNSGIKLQLALTPNQIIQDNTIRNSAEGLRESLWLVWRTLIQYGDDYGVKKLAAESHPDRKPEFLDFLAWDDMNFCDRKQIHLELAIGMKSEENALGRLQIIQKCQADLYGTVQAMVSSGTLTPDMYKKVKKPFEDTLYVLGVKDANSYLPTDEEVMAMIESGKAAAENAQPSAKDQKDIASANLDKAKTMQISAELEGTDAETQLDLMAIASGDPKVYS
Ga0207193_10073355F015856N/AMINSDTVEFYNNRLTMDVNQLKTLTTAQQDQVRHYGSQAENLLRNRELAMFIHHFKFSLADEIAAVRGYTAEDNAHRIALGNALSGIDDFVSSLKRAVYLKNRIGNTDVPNT
Ga0207193_10073358F001299N/AMNDINNPEYLSDADPEKNLDYYRQDHGGMITSHNGVADKLLQNNDLYNSMKGDWSRTSTNKSGNIIVTTGREDGKFYIRREQQNTEEVKLRVKNYRHAAELGIPDPMAPIGEDGKLTYKWMELPSVISIRISDQYFDGIPWTALKNDRTLKAQFYQVVEREYPEYVTYPGGKLPLPIRPPYPTKRGEQKYFRGN

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