NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1006601

Scaffold Ga0207193_1006601


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1006601 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17645
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (18.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016965Metagenome / Metatranscriptome243Y
F033725Metagenome / Metatranscriptome176Y
F059906Metagenome / Metatranscriptome133Y
F061680Metagenome / Metatranscriptome131Y
F096907Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0207193_100660114F059906N/AMRLSIIILSLVSTIFATSCSPAKRAQYHYKKALKNGLQLVQDSDTIRIATVDSFPIIHNDTIFWEKFIAYRDTVIHYRNIWVPKTRFQTRIEYRYKTKVEKIRGKTVYKTAKAEQVVKYKTLWWPFWLGLAIPFILRFAWNAVLSKLNR
Ga0207193_100660117F061680N/AMQVTLENNTAYFDFDEVNGSCEFNITNITEEDYEVEITNILATQVVGEVELDYILTDTQVEQLNEEIIWCIQDTNMVRDMQEPMSDMDEDDWRYDV
Ga0207193_10066012F016965AGGMIDTFTYNDIEYTITGPIEVISDTQLHVETDKGIILVDDTMEIYKALTNG
Ga0207193_100660129F096907N/AMKTREEFFEAAVIAAMQGLLAASGHYRDELIKNPCEYVANAAREYAAELTDLIYGPPIEWPKERIF
Ga0207193_10066015F033725N/ALFKNLTMVTILNREIPNQIEELTIEQFEAITDINNNQELDPIDKHLQVFAYLGIPESEFWDYDVADFVGMVRDFNSSEQKDYPTVEEIELEGYVYKAQLKLTVRDTKMIEKITIKKEKGYVSEMLAVMFKREDLTSAEHYADAHIKHKAKLIRKLNAAISIPYIMFIAKKISQQANDQITEAVESSNA

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