Scaffold Ga0207193_1006601

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1006601
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17645
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (18.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016965	Metagenome / Metatranscriptome	243	Y
F033725	Metagenome / Metatranscriptome	176	Y
F059906	Metagenome / Metatranscriptome	133	Y
F061680	Metagenome / Metatranscriptome	131	Y
F096907	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_100660114	F059906	N/A	MRLSIIILSLVSTIFATSCSPAKRAQYHYKKALKNGLQLVQDSDTIRIATVDSFPIIHNDTIFWEKFIAYRDTVIHYRNIWVPKTRFQTRIEYRYKTKVEKIRGKTVYKTAKAEQVVKYKTLWWPFWLGLAIPFILRFAWNAVLSKLNR
Ga0207193_100660117	F061680	N/A	MQVTLENNTAYFDFDEVNGSCEFNITNITEEDYEVEITNILATQVVGEVELDYILTDTQVEQLNEEIIWCIQDTNMVRDMQEPMSDMDEDDWRYDV
Ga0207193_10066012	F016965	AGG	MIDTFTYNDIEYTITGPIEVISDTQLHVETDKGIILVDDTMEIYKALTNG
Ga0207193_100660129	F096907	N/A	MKTREEFFEAAVIAAMQGLLAASGHYRDELIKNPCEYVANAAREYAAELTDLIYGPPIEWPKERIF
Ga0207193_10066015	F033725	N/A	LFKNLTMVTILNREIPNQIEELTIEQFEAITDINNNQELDPIDKHLQVFAYLGIPESEFWDYDVADFVGMVRDFNSSEQKDYPTVEEIELEGYVYKAQLKLTVRDTKMIEKITIKKEKGYVSEMLAVMFKREDLTSAEHYADAHIKHKAKLIRKLNAAISIPYIMFIAKKISQQANDQITEAVESSNA