Scaffold Ga0207193_1002853

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1002853
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29695
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (81.40%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019815	Metagenome	227	N
F025724	Metagenome / Metatranscriptome	200	N
F056546	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_100285315	F056546	GAG	MKAKDRKSILSLYISTKLINLLDTISDRHKIKVSKLAEKLLLDGLNRDQIDLSLEIDDDDAIEKITAKIIERG
Ga0207193_100285316	F025724	GAGG	MAKNRQAPAPKKTVDKIDTVDSKTSKNAIVPAKKTDEEKADLAKKKRLMLTEQVLEYISQGLSQTDALSFVGVAYSTWNGWMRADPELVADIKRAEISLKVKHLQNIQRHAENDVRASQWLLARKFPAEFGEKQTIDMNTRGDDNKVIINVIQQVQKEKHAQAIEIKHELPDELPDEIDDEED
Ga0207193_100285338	F019815	GGGGG	MAFISQTTRKAPLDQEVSISQPVLGATISQIANALNHLAFAKGRKSSISYTSRDNPTSWNYNQAHAVSNITELRHVPKGNQTYIHLHQSSKNCEYIGFVFKYVSSDDPISITVSLVRNPTTTQDIIDNGCILSNTNGELVILADFKPAIVSSSADTTGTSSIQTDFARPLFLPSAYRGNLLALKIACVDCKLDMIGSYELYKEQI