Basic Information | |
---|---|
Taxon OID | 3300020048 Open in IMG/M |
Scaffold ID | Ga0207193_1002452 Open in IMG/M |
Source Dataset Name | Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Minnesota - Twin Cities |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 32210 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (85.71%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Manganika, Minnesota, USA | |||||||
Coordinates | Lat. (o) | 47.489552 | Long. (o) | -92.573009 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012663 | Metagenome / Metatranscriptome | 278 | Y |
F041738 | Metagenome / Metatranscriptome | 159 | Y |
F048262 | Metagenome | 148 | N |
F048959 | Metagenome / Metatranscriptome | 147 | N |
F069861 | Metagenome | 123 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0207193_100245218 | F069861 | N/A | MTKRKYTGNSDGVAKGLRPGMKVFIDEVIKLSNGALWNNGAFGVRNMRSKNSLSVHATGRAVDLSYRHMVDAYDASNTKGIKNGRIEAMRILKILVANADALGLEAALDYIVKPHGRGWRCDRGGWSNYKTKTMSGGGSGDWIHLEISPAMADDPQKMREAFQNLRLP |
Ga0207193_100245221 | F048262 | GGAGG | MSAAVGENPVQSVSELQPLREAVAECIELLSEQDQFIVNAVNSEMISLEKLGKRLGVSKPHAWRLRNAAYDRLRVHLLAHPIIRERLFLDDDESGHSGF |
Ga0207193_100245229 | F048959 | AGGA | MRKMEPTLEVSMTLSELRAVVKSLAIGVDQLAKKIHRFAEDERIENERIDSIHTELTELLSAKHEMETVMSLALQGDSA |
Ga0207193_10024523 | F041738 | AGGAG | MQKVKDFIYNNPVRVAAFVSSAVAIVVAFLAPQTPVEPAIAFVLSALGLGEFAQRAENKKTDEALFTEIPE |
Ga0207193_10024525 | F012663 | N/A | MNEFRCLTCLSTFEADELPRRGSICFKCHVKTIRLGFTHGKEDFHGPTIGERQRQTLADAKANGINAEPVTNWM |
⦗Top⦘ |