Basic Information | |
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Taxon OID | 3300020048 Open in IMG/M |
Scaffold ID | Ga0207193_1000232 Open in IMG/M |
Source Dataset Name | Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Minnesota - Twin Cities |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 101862 |
Total Scaffold Genes | 161 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 109 (67.70%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Manganika, Minnesota, USA | |||||||
Coordinates | Lat. (o) | 47.489552 | Long. (o) | -92.573009 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F029756 | Metagenome | 187 | Y |
F054814 | Metagenome / Metatranscriptome | 139 | Y |
F054856 | Metagenome | 139 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0207193_1000232132 | F054856 | GGAG | MSKGTRPRPSVISQEEIAARHEGIFGKKESKPRWVPPPLPEDMQNIQSSFEKQFGTTKLPAGRT |
Ga0207193_100023240 | F029756 | GGAG | MNKRKITTRVMLDGVVDSTFKQMRQVYTDSAGEYVNCDRNKYYIVNDSFDIVYTTGRAITFTELADKFKETFRS |
Ga0207193_100023246 | F054814 | AGGAG | MAEVKLSGLYKVTVTEYDCGAQRVDPDDTRFYTTLEEAKAYKAHWETGGDPECYWRAEIQKVS |
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