NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207193_1000232

Scaffold Ga0207193_1000232


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1000232 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)101862
Total Scaffold Genes161 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)109 (67.70%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029756Metagenome187Y
F054814Metagenome / Metatranscriptome139Y
F054856Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_1000232132F054856GGAGMSKGTRPRPSVISQEEIAARHEGIFGKKESKPRWVPPPLPEDMQNIQSSFEKQFGTTKLPAGRT
Ga0207193_100023240F029756GGAGMNKRKITTRVMLDGVVDSTFKQMRQVYTDSAGEYVNCDRNKYYIVNDSFDIVYTTGRAITFTELADKFKETFRS
Ga0207193_100023246F054814AGGAGMAEVKLSGLYKVTVTEYDCGAQRVDPDDTRFYTTLEEAKAYKAHWETGGDPECYWRAEIQKVS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.