NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1000056

Scaffold Ga0207193_1000056


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1000056 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)171976
Total Scaffold Genes215 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)115 (53.49%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051911Metagenome / Metatranscriptome143Y
F071952Metagenome121N
F080872Metagenome114N
F098672Metagenome103Y
F104701Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_1000056104F051911AGAAGGMTSIYHLPTKKKYLMEPTSIFLVRYNGRWVTIHPRPFEPERMTTDVAWMQVKESITSEEAYRRWFERQRRISRVLK
Ga0207193_1000056115F098672N/AMPAKKGGGFVETMVAAGVGAYAAKNSSSMKGLLWTLAKYVLVVVVISFILFFVLRLMSTENFVPLTPSKSGDEKTQTPAGNVILH
Ga0207193_1000056167F071952N/AMAKKGSPVSDPCQVPQYSGTPGWIYLTHDTNGNAHAYFTNAKGEHPEALALVMDERVCCDTIFRVVRLAPKSYIVYDVLVLNGTRIHETLSFADRQEKIAELLDLFHFPDLVALTTIADAPVGTHIRGYEQYDHVPGSTGVFLPM
Ga0207193_100005638F104701GGAMPAMGTEMSAGRRRRGPTMKALKRVLKSHGLKSSGRKATLRARAKKAHLLSKA
Ga0207193_100005641F080872N/AMSAIKIQKVDHAEPEAHRPVVNRHKSMRTYPRGVIKGTRSRTRGGGDIVPVKDPAKPPPVRKGTLRILTKKGADLRRKTIKQTVKDMNDGTVRSSLKKSNITINPKTPSHIAREILEGGMEAGMIVVK
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