NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1000051

Scaffold Ga0207193_1000051


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1000051 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)177422
Total Scaffold Genes179 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)123 (68.72%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012339Metagenome / Metatranscriptome281Y
F014733Metagenome / Metatranscriptome260Y
F017480Metagenome240Y
F024060Metagenome207Y
F043282Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_1000051125F012339AGGMSYKPYNENLTTPTQQNPHSPASSGYRQQPVELPGVLDQTRQLFQPVIAIPPEGNK
Ga0207193_1000051170F014733AGGAMFEIWDGDLFLYAVDTEYEADEATEAGFTIRSVVAD
Ga0207193_100005118F043282AGGAGMIVKTSDVIRSYDFKPMLGREDCFVEGMVIETTSEPGYQAYKIRVTKDSWNEGNETGRFGKIIFVPVAVAYNDYPGRVMNLSRI
Ga0207193_100005119F024060AGGAGMTKQFVQVSAHKDSNNFAHCSNLSLMADQKLTATQALRYLQVMADEYALNGYTIEWIRENFDSVYEEMYGELFA
Ga0207193_100005168F017480AGGMANTQQKQQVEQKPAQPRKPNETGSISVQGHMRIFDPQTQKTYVEGRA

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