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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020021 Open in IMG/M |
| Scaffold ID | Ga0193726_1000134 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 103183 |
| Total Scaffold Genes | 103 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 75 (72.82%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.9871 | Long. (o) | -107.0011 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003581 | Metagenome / Metatranscriptome | 478 | Y |
| F009898 | Metagenome / Metatranscriptome | 311 | Y |
| F014995 | Metagenome / Metatranscriptome | 258 | Y |
| F042990 | Metagenome / Metatranscriptome | 157 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193726_1000134102 | F009898 | AGGTGG | MAGMTALQVRGAQAAGSSANIALNYSLAASEVLAGWHSDVLYLGPYGLVLDIPISPEASSRGSDRRSFENLVEKYAGPNVPVSIVLDALLKSGAVQDLGNGIVRCVARTYIAERLSPENIQEFAEAVHNVVGTMAVNLKRTVRGTGLLQRTVFADYGLTEEDLAKFNGFIRKTGEKFIDEVDTWFSKHSNKERQGPIKTGIGLYHYVENDEDHEDYLKLIHGDGTK |
| Ga0193726_100013425 | F014995 | GGAGG | VHQPLNLTAAFAFLMIGAAPILGAPRGNDLEPQTPAAFLPGGMLGIQLGGSWQQSKQNPSLHRLNCQAVKDASDFDEVCFFKASAASRVGGAQIHDGFIVGKGDQVVLVGTGISIKNADDPLAESVVQAFQSQVNSAFQHTGDNVLFVRLPARRMSAEELAGFSKKAPVLLVQLETKSNELAVLYGYLAPVNAFGSLTSD |
| Ga0193726_100013432 | F042990 | GAGG | VDIEDRLKRLQSLFTHALSGAVAAKARYLALRGDLSSTPAAIARAKMAWQQLEARKTAIISRMVALEELDQLAALEPLEVQEQNAA |
| Ga0193726_100013464 | F003581 | GGAGG | MKSMVFILVAQLHSGGAQTVAAYPSLEQCRDALKVATTNVAADYTCAATPVEGKWSQKDSRFLMVRE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |