Scaffold Ga0193726_1000083

Overview

Basic Information

• Taxon OID: 3300020021
• Scaffold ID: Ga0193726_1000083
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 165989
• Total Scaffold Genes: 160
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 127 (79.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9871
  • Long. (^o): -107.0011
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019506	Metagenome / Metatranscriptome	229	Y
F020045	Metagenome / Metatranscriptome	226	Y
F040201	Metagenome / Metatranscriptome	162	Y
F062014	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193726_100008323	F020045	GGAG	MLRGVLGVLAGVFLWAAGFFVLAMGLAQLWPDYAVHGRQWTRENLFTFTPLMACCNLAFWVLAEIAAGWVTAKIAKRHEAVWVVAALLGIYLATLHLVLYWSRFPWWYNLGVVIPVVPAVLFGGRLASPPRGADLHARR
Ga0193726_100008326	F019506	GGAG	MRLISSLMVCLALSACATDYVSQLYQPNYGVRGLKYTESNIDPTLLMNGSYASKQTNGYYGSSAFCLTDYRCSSLAQQRSSGWDP
Ga0193726_100008383	F040201	AGGAG	MTTRISAKLTALAIALMMNGFIVGGVAYLFDAQTQAHLSVISFAKQLAAFQWLI
Ga0193726_100008385	F062014	GAG	MGFDVVLIAIIVGGIALSGAYVRAEYLGWRQHGAAQRRREAAQSQLHAESLSDQRDALLPSVMKLQGFGESEAANPDDLDLAAARRSSGPSNSPRSYALAERRKRTRKRATH