Scaffold Ga0193726_1000034

Overview

Basic Information

• Taxon OID: 3300020021
• Scaffold ID: Ga0193726_1000034
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 325388
• Total Scaffold Genes: 279
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 202 (72.40%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9871
  • Long. (^o): -107.0011
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000043	Metagenome / Metatranscriptome	3655	Y
F000207	Metagenome / Metatranscriptome	1597	Y
F076315	Metagenome / Metatranscriptome	118	Y
F083815	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193726_100003412	F000207	N/A	MKMILASIFTTILIVAMSLGAMFILVQATVYVTAIESPLQRTVAIAAELLLGVVLLLGTVWLATHLAVRIFGKKHSKLAEEPLA
Ga0193726_100003415	F083815	AGG	MLARPQTRIHHPSHVFRDSAVRIGIVVGTGLSLALSGWIYLASLVPIFDRVSVERNLAAAALVAVLAFIPVLRFFRDPASLLISGLIAWSIFSLTYRTLSIFFWTLRDWYSTFQVFMIGAVLYLIVTTLSWIGTCIWKARAAHLSPPRHRAH
Ga0193726_1000034161	F000043	GGA	MLYQLGWSTLPGLRGLACSDFRATPTDAPDNDRGVAIEIGNETLRDSLLRQLEDHFAAKRFTNAADAFDTVKAFILKQSARQ
Ga0193726_1000034278	F076315	GGAGG	MPIPSYRVISVVVLIVLAISLKIYAASPKSPASQEWSPGCIASVPKSWGAFRGASTQSGFAFEDSAGTLRFVTNVPCDGTPVVALEIRRTVGNAANGGNP