NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193726_1000034

Scaffold Ga0193726_1000034


Overview

Basic Information
Taxon OID3300020021 Open in IMG/M
Scaffold IDGa0193726_1000034 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)325388
Total Scaffold Genes279 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)202 (72.40%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000043Metagenome / Metatranscriptome3655Y
F000207Metagenome / Metatranscriptome1597Y
F076315Metagenome / Metatranscriptome118Y
F083815Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0193726_100003412F000207N/AMKMILASIFTTILIVAMSLGAMFILVQATVYVTAIESPLQRTVAIAAELLLGVVLLLGTVWLATHLAVRIFGKKHSKLAEEPLA
Ga0193726_100003415F083815AGGMLARPQTRIHHPSHVFRDSAVRIGIVVGTGLSLALSGWIYLASLVPIFDRVSVERNLAAAALVAVLAFIPVLRFFRDPASLLISGLIAWSIFSLTYRTLSIFFWTLRDWYSTFQVFMIGAVLYLIVTTLSWIGTCIWKARAAHLSPPRHRAH
Ga0193726_1000034161F000043GGAMLYQLGWSTLPGLRGLACSDFRATPTDAPDNDRGVAIEIGNETLRDSLLRQLEDHFAAKRFTNAADAFDTVKAFILKQSARQ
Ga0193726_1000034278F076315GGAGGMPIPSYRVISVVVLIVLAISLKIYAASPKSPASQEWSPGCIASVPKSWGAFRGASTQSGFAFEDSAGTLRFVTNVPCDGTPVVALEIRRTVGNAANGGNP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.