Scaffold Ga0193738_1009344

Overview

Basic Information

• Taxon OID: 3300020020
• Scaffold ID: Ga0193738_1009344
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3230
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8827
  • Long. (^o): -106.9107
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031902	Metagenome / Metatranscriptome	181	Y
F048297	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193738_10093443	F048297	AGGAGG	MENHPHEPEEKGSLTGYAAIKYTAIVVIVIAILVFLAAYVLPLVRE
Ga0193738_10093444	F031902	AGGAGG	MDRFLADRSRIGRAEVNEDSQPTNQVVITRRAVIGGALGGAFVTLLAGPELAMAAEKASKAAPLVLLLKGLYSPAVNGPDLGLSTVDLSDGSYSTTKIYPVIGTPDHTNVLEAIGDFYVQFDGMLCAYDLPGGAIAMEFRPNPNLITVPDGFDGSFLQGTFELTIPEANGAFRSFAGGHNLMVDNLHFLASGDVDEYCFCFIYRN