Scaffold Ga0193738_1000228

Overview

Basic Information

• Taxon OID: 3300020020
• Scaffold ID: Ga0193738_1000228
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38895
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (40.38%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8827
  • Long. (^o): -106.9107
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007651	Metagenome / Metatranscriptome	347	N
F012397	Metagenome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193738_100022833	F012397	GAGG	LNKVLIMLALVTTFSLLSAPSLVVGEIKNEIKVTPPLNWEPSPTNNSTSMIWFQNSTKSVFAIIKAPDNLGIPLFLVGPFMTGYLKYKDILEYSDKVTFGHSNLGHRYFLNLSSPSKLLNSSSGLIPKNDFLSEIPQGYDVPFKGMLILTQKQDDLFAIIFLNPKEKFDYTLKGIQPTLDSIELTSYTVMEN
Ga0193738_100022842	F007651	AGGAG	MLRMRSNSMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSDSFRNMHDNSVQYYKQKANEELDKMEKNIQSGNKLGAINEKLLADTYLSFATTI