NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193696_1061219

Scaffold Ga0193696_1061219


Overview

Basic Information
Taxon OID3300020016 Open in IMG/M
Scaffold IDGa0193696_1061219 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)987
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9138Long. (o)-106.8952Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000938Metagenome827Y
F044957Metagenome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0193696_10612192F044957GGCGGVTGRITVHLDRGLGWTAPVFVAGCGYCGTELARSTSQAVAERTARRTRCPVCGTRTARRLPGTTSPATDLALARSRRELARRRRWPHLVSPSQRAGRR
Ga0193696_10612194F000938AGGAGGVARRTTWLIDMGDGTWAVCCTACRIGLYRGPKAGADRAARGHYCEPVLPLGRRRSA

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