Scaffold Ga0193696_1012469

Overview

Basic Information

• Taxon OID: 3300020016
• Scaffold ID: Ga0193696_1012469
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2312
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9138
  • Long. (^o): -106.8952
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008371	Metagenome / Metatranscriptome	334	Y
F022299	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193696_10124692	F022299	GGCGG	VRAGKRAGTDTRRATVALVRAVSDLVDKAVDQVVLGDERVGSVAEARQLLKRDERVEALTGEIQRVAALAVPVLRRLARGARFTKVPWVFVATTTLSIGIAVRSGVKDIQTLSSLIAQRLEQAMGAPADPALVKKLAVDLYLHPRRAPSLDNDRVRIVRLTRKWLIGGAFGRKTERRASRALEAAERIDVAALAAEWDNAHRDKAGRRDRVTGSGSCG
Ga0193696_10124693	F008371	N/A	MEVVNRWRAANFERRAVEDVLAEDVEWVVPGRGGVTTLRGIDAVLEWYAAGGAADAGAPEDLGGAESVDVSEERGELEDFGEGRVGSLNRLIYTRKESGEVADVKTARLVYTVRDRMIVRYELENLDESEVTRDR