Scaffold Ga0193732_1008489

Overview

Basic Information

• Taxon OID: 3300020012
• Scaffold ID: Ga0193732_1008489
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1779
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.9536
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007894	Metagenome / Metatranscriptome	343	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193732_10084892	F007894	GGGGG	MRGTFRRQNLSLLAAFTLIASGCASMRPYDPGPGKRVAAAVIQDTYLSGESVNVTIANLSDVTLFYPDGFCKTELQKKDGTSWKTVEGPARCSVSVDFLDPGQTVVHQYRLPAGVAVGTYRLSMPMPLPDDAFKPEPELQTPAFTVYAADVRNLGMTSSSR