Scaffold Ga0193732_1003616

Overview

Basic Information

• Taxon OID: 3300020012
• Scaffold ID: Ga0193732_1003616
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2732
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.9536
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022965	Metagenome / Metatranscriptome	212	N
F055459	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193732_10036161	F055459	GAG	MSIFGRKDDHDFDALIHAMGPLLRGKGPDLQGAVLAHLVSTWIIGHHPSWRDRVLARHVREVRDLIELNEEALSARNRGEPEDW
Ga0193732_10036163	F022965	GAGG	MIDTGTGDKVGPTLIIKPITECSAGELIRLTSGAWAIVADDSKARRIFVISGDDAPVTFVLPEDSRESCLSYGTGFRVVSVHASFVGIHTYGREGFDPIGKLIVSRPFVSGERTRRYFAAPADQPLFLDLDSFQIVSEPRGYRASFQDWEVSISGPGPHEMVTLVKSPVRGSRPRALSA