Scaffold Ga0193697_1008781

Overview

Basic Information

• Taxon OID: 3300020005
• Scaffold ID: Ga0193697_1008781
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2460
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9138
  • Long. (^o): -106.8952
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002575	Metagenome / Metatranscriptome	547	Y
F003317	Metagenome / Metatranscriptome	494	Y
F063681	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193697_10087812	F002575	GAG	MAGTPDDEDRQAREFIDRVVETQAKHGYGVKLSKKRYEEAVARVAAGFRGLTDASKGHAA
Ga0193697_10087813	F003317	GAGG	LALSLNKLKRLGDAGLVDLFETDRKLWTAMTKDAYAYTSKFVRGSGNEVRPDDVVPTLTPALEVSDRLRTYLAERKLSQQYWYVWFAELVVDRLWPDLH
Ga0193697_10087816	F063681	AGG	MTPVRAFGLCLAALLVVLAGCGSSPKTVTKAEYQTQIQTVGADLTAAGSQLGKSIDIATFNESVDNFQTHLRDASKKLNGLKPPADTQDVNKLLAGSFHDLADELEPVKDARRESIVKARAALAKVGKSQAVEDGRTAIQKLQKLGYDTSELGAL