Scaffold Ga0193739_1000324

Overview

Basic Information

• Taxon OID: 3300020003
• Scaffold ID: Ga0193739_1000324
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13520
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8827
  • Long. (^o): -106.9107
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005305	Metagenome / Metatranscriptome	405	N
F007651	Metagenome / Metatranscriptome	347	N
F009342	Metagenome / Metatranscriptome	319	Y
F012397	Metagenome	281	Y
F023903	Metagenome / Metatranscriptome	208	N
F057150	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193739_100032411	F005305	GGA	VEDLEKELGPLIKNFQNLVKDAKAKKLDSLREDEDLKKEFNRLLQHVIEPVMRKFESYLESKDVNSSVYIQSEIVAEKNPSIEFSLHLKLTHESRYPNIKFSLSGEKISVQEDRLMTKGEVRQDMTPEYYDKEQITEEFIKERLIRLIKSCFDKNWQSFYP
Ga0193739_100032412	F007651	N/A	MLRNHSNYMLNDLNELIARKDKLEGELYHELSSDYNELMKKLNESFRDMHENSVQYYKQKANAELDKMEKNIQSGNKLSAINEKLLADTYLSFATTI
Ga0193739_100032420	F009342	N/A	MIPEIYLSTLDVIVTEMIRFINFNLYILLCITAIYFLTVSLVAGYDVQFYSKDEHPFGISYSDWVAKFWNWDFSIPIDSQTNTLAGLKDNGCLMHKENSMVMLVDTAAGGIWNQKCTISRTEGILIPIWTGECDQALKGFESYSFKQLSECARAYDLGIVKGQVKVDDIPVATLDAIDYKTNVMNNVTEVYTKQFNAVVPKESHLISERYGTFPAAAHGWFVFLKPLQPGDHMVYYQNSVAATTLSGAGNMNSAQFTYHLNVE
Ga0193739_10003243	F012397	GAG	VNLIKLCFDKEWQSYYSQALKGIKTIIRMERRLNRILIPLILVTTFSLLSAPCLAFSEIKDEIKITPPLNWEPSPTNNSTTMIWFQNSTKSVFAIIKAPNYLVFPLFLVGPFMTEYLKHKGILESADQLNFGQSNHGYRYLLNLSSPSKLLNSSSGIIPENDFLRKIPQGYDVPFKGMLILTQKHNELYAIIFLNPKEKFDSILNEIQPTLDSIQLTSYTTMPN
Ga0193739_10003246	F057150	GAG	MFNMKYMKIAIFVLTVSILGTSALIVNSGNMAYAQGNATNTTTTIDADSLIKDLKARHPILAQVVTNEDKDLVVKLKDLDTKEAVKNALALNMLHLLQQYREIDEPQ
Ga0193739_10003249	F023903	N/A	MVDLMINQENKKCDNCGDSVDRLVPLNDPTRIGRWWCLKCIYKEGKAKFDADAKNG