Scaffold Ga0193739_1000294

Overview

Basic Information

• Taxon OID: 3300020003
• Scaffold ID: Ga0193739_1000294
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14284
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8827
  • Long. (^o): -106.9107
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005305	Metagenome / Metatranscriptome	405	N
F007651	Metagenome / Metatranscriptome	347	N
F012397	Metagenome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193739_100029413	F005305	N/A	VEDLEKELGPLIENFQNLVKDAKAKKLDSLREDEVLKKEFNKLSQHVIEPVMRKFESYLESKDVNSSVYIQSEFVTEKNPSIEFSLHLKLTHESRYPNIKFSLSGEKISVQEDRLMSKGEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0193739_100029414	F007651	GAG	MLRNHSNYMSNNLNELIARKDKLEGELYHELSADYNELMKKLSGSFRDMHENSVQYYKQKANEELDKMEKNIESGNKLSAINEKLLADTYLSFATTI
Ga0193739_10002949	F012397	AGAAGG	LNRILILLLLVTTFSLLSAPSFAFSEIKDEIKVTPPLNWEPSPTNNSTTMIWFQNSTKSVFAIIKAPDNLVFPLFLVGPFMTQYLKHKGILESADQLIFGQSNHGYRYLLNLSSPSKLLNSSSGIIPENDFLRKIPQGYDVPFKGMLILTQKHNELYAIIFLNPKEKFDSILNDIQPTLDSIQLTGYTTMPN