Scaffold Ga0193718_1039283

Overview

Basic Information

• Taxon OID: 3300019999
• Scaffold ID: Ga0193718_1039283
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1041
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9362
  • Long. (^o): -106.9425
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000805	Metagenome / Metatranscriptome	883	Y
F021376	Metagenome / Metatranscriptome	219	Y
F065748	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193718_10392831	F000805	N/A	HQQTWQAPATWHVKWLDLAWLWGFLVALALIILWWLWQYRSTRQRGIYPTDQFGGYTSEAAGPATRFFLLFTVLVTGWAVVLIVGHLVWGQKF
Ga0193718_10392832	F065748	N/A	MQALKGHVQEYPGCQKLEAFVEPAGLDYRIHCYTVWDTPEQLEAFLERGYTFERMLHDVAGITAQPTLVMEKIF
Ga0193718_10392834	F021376	AGG	VYVKHLTSLQFLTYVAFFTVVLAAMFKFVPGKAPPVRTEPYSEDELGAHDRKTAKYFIAGGFFLVLGSLHMVVKNLPWVAD