NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193693_1044893

Scaffold Ga0193693_1044893


Overview

Basic Information
Taxon OID3300019996 Open in IMG/M
Scaffold IDGa0193693_1044893 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)726
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9136Long. (o)-106.8951Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F036398Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0193693_10448931F036398N/ARGSGGDVLITGIATYVGVRPGMHVWLGVDWDVAHSNGAQFQPVRRHISLGITQQFRIHL
Ga0193693_10448932F000092GAGVKQHLGRQSGVHNVEVSLIDGKVDVTPKEDGHIDPAQLLKATYDSGVSVAELDITARGKVVKDSSGNLLLQVEPNQSFTIAPNELSKAVELLANSPTQVTVRGQLYKKPDGKRNKKADASAALKLLILEIQKK

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