Scaffold Ga0194032

Basic Information
Taxon OID	3300019938 Open in IMG/M
Scaffold ID	Ga0194032_1000017 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW8Nov16_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019938 Open in IMG/M

Scaffold ID

Ga0194032_1000017 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW8Nov16_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18010
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (96.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

18010

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (96.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	USA: Delaware
Coordinates	Lat. (^o)	38.7906	Long. (^o)	-75.1638	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware

Coordinates

Lat. (^o)

38.7906

Long. (^o)

-75.1638

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034398	Metagenome / Metatranscriptome	175	N
F039049	Metagenome / Metatranscriptome	164	N
F040080	Metagenome	162	Y
F063185	Metagenome	130	Y
F073281	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194032_100001711	F034398	AGGAG	MIAEQYRNIKPHFVHAYHVPMVCRWSCILLDQDTENPPFEPARYFVVNVFAETKDAVLNCLGEEYPWCDIMYVDKALGGHSDDDFLESWLHYFDAKEAIPVREAPHGNSK
Ga0194032_100001713	F073281	AGGAG	MRPRTICHPEALADWRANDEKPYTFSGETNNASIRQHSTHNNEIPKEQKKLDGLLALRLKEAIERENRKRGTVRKER
Ga0194032_100001717	F040080	AGGA	MKTLETFKNDLGTLRTDLNATTYRVEKVQELLSDLVEKLDGLYDQSVSNKDQAVDLVRTADNLKPRQEDRRVFSSHYRMLAILNEYGVMHREHVAKLLGVKELTVQQMMHVCRHHGLAHLKTSRGVVSLQSLADGVSENINFKI
Ga0194032_100001719	F039049	N/A	MAGEINFYSPCEPKFRDHGPHVHFLLHIYGKTMNLLPQQRKKRELSDQQQAFLTALFENGGNFSRACEVSGYSQGSIGHLKESLADEIIEGARNILAGGALKAANKLVATIDAPEIERGDNIRLQAAESLLNRVGLGKQETHNVNVQAVHGVVLLPPKKEMVVEHD
Ga0194032_10000178	F063185	GGAG	VEYKSKYMADYYKEQEPVEFIVTQERTILVQYTVEAESMVDAIQQIEHGNYDCVIDEDSSYAETEKTGRIISVRVNDDD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194032_1000017

Overview

Ecosystem & Geography

Associated Families

Sequences