Scaffold Ga0193728_1153987

Overview

Basic Information

• Taxon OID: 3300019890
• Scaffold ID: Ga0193728_1153987
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1008
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9225
  • Long. (^o): -106.9538
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F025713	Metagenome / Metatranscriptome	200	Y
F065748	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193728_11539871	F065748	N/A	ADWETVYASMQALKAHVQEYPGCQKLEAFVELGDGGTVRVDCYTIWDTPEQLEAFLERGYTFERMLKGVANISAQPARIVEKVF
Ga0193728_11539872	F000280	AGAAGG	MADEPRQRPARPLVGYRDVGEDVRHSRRSQTRAWVILAGLMLIYLGWTLIVYFLEPGLR
Ga0193728_11539873	F025713	AGG	MWVKHLSSLQFLTYVAFFAVVVAAICRFVPGKPAPVREEPYPDEELYAHDRKTAKYFVAGGLFLVLGSLHMAIKNLPWLAEYLARTGYAGHLVRDLSNTHVTIVGGGTLLATGLCWLALPRIVGRPLASEGLAQCAFWFTAIGLAVFYVALIGNGIAMGSLIEHGSSYPAAKAHMGNWYKAPVGMGA