NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193728_1153987

Scaffold Ga0193728_1153987


Overview

Basic Information
Taxon OID3300019890 Open in IMG/M
Scaffold IDGa0193728_1153987 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1008
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9225Long. (o)-106.9538Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F025713Metagenome / Metatranscriptome200Y
F065748Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0193728_11539871F065748N/AADWETVYASMQALKAHVQEYPGCQKLEAFVELGDGGTVRVDCYTIWDTPEQLEAFLERGYTFERMLKGVANISAQPARIVEKVF
Ga0193728_11539872F000280AGAAGGMADEPRQRPARPLVGYRDVGEDVRHSRRSQTRAWVILAGLMLIYLGWTLIVYFLEPGLR
Ga0193728_11539873F025713AGGMWVKHLSSLQFLTYVAFFAVVVAAICRFVPGKPAPVREEPYPDEELYAHDRKTAKYFVAGGLFLVLGSLHMAIKNLPWLAEYLARTGYAGHLVRDLSNTHVTIVGGGTLLATGLCWLALPRIVGRPLASEGLAQCAFWFTAIGLAVFYVALIGNGIAMGSLIEHGSSYPAAKAHMGNWYKAPVGMGA

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