Scaffold Ga0193743_1013727

Overview

Basic Information

• Taxon OID: 3300019889
• Scaffold ID: Ga0193743_1013727
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4447
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.883
  • Long. (^o): -106.9108
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025057	Metagenome / Metatranscriptome	203	N
F071261	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193743_10137272	F025057	AGGA	MMALPTTTNGLRARSDRFGGGGTCSGSSAARGLLGEMGGLSLIDAT
Ga0193743_10137275	F071261	N/A	MDGQRTPLQDFETLYIGEVEPAVVRRAFVGHVLVGYVLQNQDLAKSRLCAIAKEV