Scaffold Ga0193743_1009470

Overview

Basic Information

• Taxon OID: 3300019889
• Scaffold ID: Ga0193743_1009470
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5653
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.883
  • Long. (^o): -106.9108
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017022	Metagenome	243	Y
F032948	Metagenome / Metatranscriptome	178	N
F055120	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193743_10094701	F055120	N/A	MQTELNALTDAKTLFERMCVDGTRFQAHKFMSAVESYEGLREAANQGSEVTSNYFPLLSDVFSAFFQNKARLKQNPPRDTEENRRVMETVLGLKEYEELHTVSRLDFFASAAATRAFSDQVIKLIKQKKEEDKKEPEKGKPNTSLMGIDPDTLRWAIRRSLKKGLEEAQEAKQVVETFGRQEGGIQRIPLTEQF
Ga0193743_10094705	F032948	AGG	MKDLYLFNCKREILARKLQTLPITIPLKPIRPETALRRALSLNLDQKRYTFEESSFEKVNDKPVQIILSRDALSNGDVDASIGKAYVEQGQIEVNTTYPEIRNSLENGFRFHMETAITRDLSIVVTKYLTTCMGIPVRPKNGEIYFALEKYIPEVLDLMTVIDSLGQESTIRVSPVVGDEVQKVVERAHDHFRTSVDTLVRLTEEISDETHIKTLNTRLKDARDLLEQAAAYEIGLGMELEEVKRNIQDAKSRIAERLLGKSAANHHPEEPVSPPAYTTRSTGQMDLI
Ga0193743_10094706	F017022	N/A	MKCLHHQDCEECRLNIEIIGINGDLISKQILQGMEKRGEQVAVHVNRKGELLSVLTVKTADVPDALSMDHEFEARYTDYLRELKTGEALIMMTTEGSNHVGIYKLPPQPLH