Scaffold Ga0193743_1005860

Overview

Basic Information

• Taxon OID: 3300019889
• Scaffold ID: Ga0193743_1005860
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7639
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.883
  • Long. (^o): -106.9108
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012957	Metagenome	275	Y
F013621	Metagenome	269	N
F071297	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193743_10058603	F012957	GGAG	MDKPFLQTLNLYRSKSALQISPSPELALVFVSLASVIPGMENKMPDKNTKKYLWDKKLTASFNFEGALEVAAAATALAEGKENLLADSKGTLPSWYRDPSKCGRDGNAKIIGFYRPKDPPDGSKVRYFLGITENNKSKDGQKIGISLEYPDLFKIARVMEEAALAILGWRKQIEERCDGNGHATGTSDSHPSEIPATHTQSTAMANGTAQQGEVF
Ga0193743_10058604	F013621	AGGAGG	MISQEEAKDFIRRYREVILETPYGEIHVCGSKEVYEELIGQGKLAFSPIELLQLQKAAESGSLETIVKIKSSVPGARIKDIIPVEKKPETTQKQS
Ga0193743_10058608	F071297	N/A	KNDPGQSQTYYALTARPEPTVSDLYFTVLIKHSAVPVHSGWKAWLYKRAVQRKEVEALTTHGIHGVKVILDDDTLAVDISVAIKKGKLRNVFDNDSLLPFPKTS