NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193751_1000663

Scaffold Ga0193751_1000663


Overview

Basic Information
Taxon OID3300019888 Open in IMG/M
Scaffold IDGa0193751_1000663 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25264
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (81.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000065Metagenome / Metatranscriptome2788Y
F011023Metagenome / Metatranscriptome296Y
F042436Metagenome / Metatranscriptome158N
F096942Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0193751_100066310F000065N/AMTHSKKSIPALRKSPEPPLSYLGATPDSDRAKRPPLAEPSATGEELNPGDRVEGLGNFGIPTGELGTVEQTNEEDAVVKWDDDGRKRLHQPSLKKI
Ga0193751_100066319F096942AGGAGMGALKTGSLVGLLLAQLVAAACIGCNQTSRSLQDRIPGSDPKKYHSVQDAKGWKNPYLIVRRDGIEIVGMTPVGQVISVESVPLTLEKLPDSAWPYGLVVVVQDMGILSREKDPARIEANRAKLLNLLKELGIAVDRWPSA
Ga0193751_100066321F011023AGGAGVPISAKSNSQLARVAANLAIGVVGLMIVRLIASALPMFHDAGWIVEGKLTVQAGVVIAVDALLLTVLVRFAIEIRAFLLVRFPAISSFGNMAASLVFLIVTGIAYTDFKPVVHAWPDVKPVYLWSFFAVAAALLAGIVVLIFRERDSMAALILRQPMPNRPSTQHSDADESTAAAAGR
Ga0193751_100066324F042436N/AMNNENEKGREHDLRQRIVSLIRANEQALKKPITNEEVQKLKAAAARLDQMLKAAVDADGQVLRSAAARLDQLLEDIATGKDVTYDLKRRRNWQKREDG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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