Scaffold Ga0193751_1000596

Overview

Basic Information

• Taxon OID: 3300019888
• Scaffold ID: Ga0193751_1000596
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26685
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (93.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8924
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F055974	Metagenome / Metatranscriptome	138	Y
F079062	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193751_100059617	F002560	AGGAGG	MVEQNSPPPCDSARAPVIPLPIALYVSDGLIFELYDGGRPFRSFSIRWEKLVPAKENEPEAASQSPQTVLRIHQD
Ga0193751_100059618	F000208	GAGG	MKIRVTTRAALFEERKQQHIERGYRIEDERPVPVNGLCSFIAVREIPASDLFGEAQALNGKHGSRGDC
Ga0193751_100059633	F079062	N/A	FKACGSTDPDTGWQERKKDIRADAAIVSMSPAKLSLGMVASLQSPLPFHPVKSLYRAS
Ga0193751_10005964	F055974	GGAGG	VLMKIKQGSLVVCLFLFLFVVIGGSLHLNPGGAFLAAATGTPLVFHVFNRRWEGKTVEHDLPRSSSCPGSVRRVAETHANHPAAFETETAVRQ