Basic Information | |
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Taxon OID | 3300019887 Open in IMG/M |
Scaffold ID | Ga0193729_1000008 Open in IMG/M |
Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 116119 |
Total Scaffold Genes | 137 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 89 (64.96%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9225 | Long. (o) | -106.9538 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002544 | Metagenome / Metatranscriptome | 550 | Y |
F011933 | Metagenome / Metatranscriptome | 285 | Y |
F011980 | Metagenome / Metatranscriptome | 285 | Y |
F017054 | Metagenome / Metatranscriptome | 243 | Y |
F020630 | Metagenome / Metatranscriptome | 223 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0193729_1000008103 | F002544 | AGGGGG | MMEGLDTSRVAPDEYVEFRAAGDPVKGEFHCSACGYGVTIVRALPICPMCGGSCWERTAWSPFGRASTVV |
Ga0193729_100000812 | F011980 | AGGAG | MTGSHAEEIVGDYFESDDWAEQLGTDTEEEPDLDLPPLPPLRPEAA |
Ga0193729_100000834 | F011933 | GAGG | VKAAAIILVSVGTVGVLVTFVIMRRKLEALRRLKDGE |
Ga0193729_10000086 | F020630 | AGGA | MEQVVDLATRKSGSIAVALVWDRRDETLRVFAYDGSTGEEIVVPVSGAEAAEVYRHPFAYTARSLKTKLSAGE |
Ga0193729_100000899 | F017054 | AGCAG | VRALSPVERNERRRLRRRQETIRWSIRVLVVGLVFALGVALGQAIQDNPQPGRTLTFDRTLHIPTRGQQGSTITP |
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