Scaffold Ga0193727_1000695

Overview

Basic Information

• Taxon OID: 3300019886
• Scaffold ID: Ga0193727_1000695
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13366
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (55.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9871
  • Long. (^o): -107.0011
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000556	Metagenome / Metatranscriptome	1027	Y
F042882	Metagenome / Metatranscriptome	157	Y
F101232	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193727_100069517	F042882	GGA	MSGELQSMFDYEPPDPTKVEKPRRRRREQRAPTTRRAVILRGLVRLALLLGGSVGSVVLIGWLVARHSGSPLGDVLPTAFYFAGAGVGVLAVLGGTGVGRSYRSYGSYGAEAGVPRQRAVNSSVFFGLLALFLFGLGLALDYLL
Ga0193727_10006958	F101232	GGAGG	MTIDLRVVRATLLLAAAILFFAGAGLGIEHERKTLIVWGVGFGLVTLDRLIVLAIETFWVRGS
Ga0193727_10006959	F000556	GAG	MRAEPQIAFCVREVEPPGVEVRVNFGVFAGRGATPAEIDELAKSLLPKVGEVAIVAEQRHEIGEEAEASLNQVRIEVSPEHLPDDEHELDMLCGRLVEAAEQWANACFADRPRADMEA