NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193747_1058595

Scaffold Ga0193747_1058595


Overview

Basic Information
Taxon OID3300019885 Open in IMG/M
Scaffold IDGa0193747_1058595 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)954
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8925Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003551Metagenome / Metatranscriptome480Y
F010636Metagenome / Metatranscriptome301Y

Sequences

Protein IDFamilyRBSSequence
Ga0193747_10585951F010636AGGAGMKNLSRLLLPPTLAAVLLLACTPTNAAHRGGGSAY
Ga0193747_10585952F003551N/AMFRLRKRDLIIPTVLIVAGAVGYGVYSEWAGPRFEAGLRRTEADMKSNLPLRVDQNTTLVDVKYERTHSIYWYVIDKADQFDPQETARQVQMGVCTNADNSSTMKKEGFSYEYHYRTKEGLALSDFKITTCD

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.