Scaffold Ga0193747_1046433

Overview

Basic Information

• Taxon OID: 3300019885
• Scaffold ID: Ga0193747_1046433
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1080
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8925
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000805	Metagenome / Metatranscriptome	883	Y
F001079	Metagenome / Metatranscriptome	785	Y
F021376	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193747_10464331	F021376	AGGCGG	VYLKHLSSLQFLTYVSFFAVVVAALFKFVPGRSPPVRKDPYPDDELHAHDPKVAKYFLAGGLFLVLGSVHM
Ga0193747_10464333	F001079	AGAAG	MVTELVPSAQPYVSWSSASIAVVPAEQWPLVFGSMQALKGHVQEYPGCQKLEAFVEPAGRDYRIHCYTVWDTPEQLEAFLERGYTFERMLDDVAGIQAERPHLMEKIF
Ga0193747_10464334	F000805	N/A	GPMGMPSGESPQHAQQYYQYLQAHKETMQRADTWHVQWIQLAWLWGFVIALVVVILVWVWQYRSTRQRAGPYPVDSFGGYTTELAGPATLFFLLLTVGLTVWAVALIVGHLVWGQKF