Scaffold Ga0193747_1001143

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193747_1001143

Scaffold Ga0193747_1001143

Overview

Basic Information
Taxon OID	3300019885 Open in IMG/M
Scaffold ID	Ga0193747_1001143 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7456
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (40.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8925	Long. (^o)	-106.9111	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008444	Metagenome	333	Y
F010880	Metagenome	298	Y
F014022	Metagenome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193747_10011433	F014022	N/A	MLNEVGQTATRAAQPYRQHIIGLPLQCSLFGQVARAATTIGLPSLTTEQDFPARLDENGDLFLDRWQVAALTRALPSWFTPETLEFMHTTHAAACDALVDASENAARVTASLDGAARKVWEDLANKMALVLAYGILSKFVPDILLRALADAGDAEPPPFPEQSAGAELMQNTFALYQACCALKYPPQRLQREWPRVSPEVFHLVSEFCNRQTGFGPLSWDSPGYEDPNYVVRLLHSAFDEVDAKEVRRHLSFVKRPAVARSTINMPTKIAALRHVLGFWLDFLERETWYVRRAFYVGMIPLLRRLAAQYRRQIPTLQLVDLLFLDIRELVAGTVDPAVIETRRRRYIENTKYLSLHGIEPSRLATMLGSS
Ga0193747_10011434	F010880	GAG	MSYALKKGTTSKILLVYALDAADMRSGKTGLNSRTPDSRAAYIREGEAQVRRIPLVEGKLGEYRAGSFVEIDSKLLPGVYQFGVPDEMLAPDAETVTLVLKFPGAVIEPISIHLVAYDPQDADRLGMSALGPEGRRAALRGAFPRLTAKELGDAQ
Ga0193747_10011435	F008444	AGGAGG	MPVQHAYTMKAGTKSKLLLVYATSADGTSGKTALARNLSAGSAAYIREGDSAARNVPIVEGRVGEWGAGAFTEVDAELLPGVYQFGAPDEMLAEGSARAVLLIRFPDTVIKPVETNLVAYDPQDAERIGVWSLAGHKRHEFLRQALPRFTEMELALGEQAEKELAARLNAKKES

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