Scaffold Ga0193747

Basic Information
Taxon OID	3300019885 Open in IMG/M
Scaffold ID	Ga0193747_1000058 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019885 Open in IMG/M

Scaffold ID

Ga0193747_1000058 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	71928
Total Scaffold Genes	76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	57 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

71928

Total Scaffold Genes

76 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

57 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8925	Long. (^o)	-106.9111	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.8925

Long. (^o)

-106.9111

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000503	Metagenome / Metatranscriptome	1073	Y
F012630	Metagenome / Metatranscriptome	279	Y
F022071	Metagenome / Metatranscriptome	216	Y
F022384	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193747_100005812	F022071	GGAGG	MLRCALATILVFLLAGIPLPARPAGTPNLLPLGVVTQASGAHFRAAKVSAGATIYDGDGLSTEAEGALQFRGSAAVFYLPGSSGVTLHGLPMGTQAQLQTGTVVFSTAKAVAMEILADGAFIRPLADGPTIAQVTIVGPKELQIRARRGALQFAYAGETEKIAEGASYRIVLDPPEAAPPFPQRVPTKAGRESKKYKIIAIVAIGWATEWGFHEIFESPARP
Ga0193747_100005842	F012630	AGG	MSFWNYKIAGVAFLIFLGCAPGAFFSQSKRDKSVWRYDGGLLFETDGSLPNGVCFRVSGNATSPEFFENLKRIDDGHGTVFRRGVETVTQFPDQLLLSFVIHDQSCSPGLHQVGTRMYLTREMMSALQLSLYWKRGVELRQVKNIREVGMSVEPIVPYATALAAELPQRFEWSYQLLAPSAGVPLTDSLVFVFRTAEGRIAARVAARL
Ga0193747_100005866	F000503	AGGAG	MSAEAVGRHSIMPLGDLVRLYRCHAGTFGEPVALSAFGLTSAETERLFSGYDEDYHISRFFHFSEAAGEKFLVNEIPATHVSLDAEIETIL
Ga0193747_100005868	F022384	N/A	MFAARVLDYRLAFLFLAALSLGTAVPLAFGWARVLPEEPLPFGNAEDSFRRTRNSPAAPVLRSKKRDPFAIVLLLCVTVSYACQLPGVPRGMGFGSIPTVIPHNTGGRIEFAAIWFLVLIPGFASVYSLLCPNFLRVPLIAAGMMILLLWLFVAPLRAALEAVP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193747_1000058

Overview

Ecosystem & Geography

Associated Families

Sequences