Scaffold Ga0193741_1002345

Overview

Basic Information

• Taxon OID: 3300019884
• Scaffold ID: Ga0193741_1002345
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5365
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8826
  • Long. (^o): -106.9101
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066553	Metagenome / Metatranscriptome	126	Y
F104672	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193741_10023452	F104672	N/A	MTIRVIEVWDAADRSESLYQRINDVLKDNNITREDLIDIKYSTVYIPEDKKITSQALIIFDKKEEEEVVITELDVVEDKDELLRD
Ga0193741_10023458	F066553	N/A	MNEKKDETNSDQFEKLAIAGEKSALHMRTIDDFAHWVTDNMMSSIDVKECTSILEDFVKSNEHIIQRINKVMPIS