Scaffold Ga0193741_1000624

Overview

Basic Information

• Taxon OID: 3300019884
• Scaffold ID: Ga0193741_1000624
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10571
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8826
  • Long. (^o): -106.9101
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013837	Metagenome / Metatranscriptome	268	Y
F043689	Metagenome / Metatranscriptome	156	Y
F045739	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193741_100062410	F043689	AGGAGG	MTTLMDTVHIQAPDRSPVKPVSPLDPSWDTPSEPSERSFEDGPRNSQWDRLAMRLSSQPLWEEAA
Ga0193741_100062411	F045739	GAG	MVAALIGIAILIFAHATVLGIVVGIAFLGLAVFLYRRPLVRRIGLSHR
Ga0193741_10006249	F013837	GGAGG	MTTLIDTVRIEAPTRPPVRPTARWMPRDTATVPRSLERSFEVESRGGHARTVVGRLADFDDEAQTYMVLTRSGVLDRVPLRDITSSHGVPRRGLPSAAQDHRTKEAR