Scaffold Ga0193725

Basic Information
Taxon OID	3300019883 Open in IMG/M
Scaffold ID	Ga0193725_1000001 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019883 Open in IMG/M

Scaffold ID

Ga0193725_1000001 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	116588
Total Scaffold Genes	118 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	84 (71.19%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

116588

Total Scaffold Genes

118 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

84 (71.19%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9866	Long. (^o)	-107.0007	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9866

Long. (^o)

-107.0007

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002155	Metagenome / Metatranscriptome	589	Y
F052898	Metagenome / Metatranscriptome	142	Y
F063430	Metagenome	129	N
F068627	Metagenome	124	Y
F068642	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193725_100000127	F068642	AGGAG	MQTPLGREIPEALRRHNEEQRRDPEDVVSELGWRVRVVVLWRQSEDDPERWIYLERMLPGKFSYETVKQQWGGGAYRIRLFGAWNRARRQEKYITQVAFWIHRGFQSTPALRARLREVARRPLKD
Ga0193725_100000128	F063430	AGG	MGRARPDLIRVLEENPPGPQAGIRLVRRVRTREYVTEIGPRGYLSQIEAAAFLGKSVVAVNRYVRLGLLKDVTRYGISMIQLAELRRFRRECLEGGKGGRLRRNAGVELRRRTTS
Ga0193725_100000129	F068627	AGGAG	VSVSERKDHGLRLESATKMSAVEPLLTATDVGCLLAIATKRVYEVVGHLAVQLAPHTLRWRLSDIAALIEERRRSK
Ga0193725_100000181	F052898	AGGAG	MRASSQTRLSDRRRALLDQASVALRGQIVALWRLTGGEAVAELVSRSGLPQLVEFDVAGLLQRWGRVAPAGSLWVGCRIDPDHWQVAPVRSDPPEPPPTGIERRSSERLVMELAGFSLGALERIWTAADQATVYLCSALCILDVCLGRIRTAQVLTPGVQAHLLSDLAGVADAIDNALSA
Ga0193725_100000197	F002155	N/A	MRKSEFEMRNGLALEFRISHFAFLLFLTACTPTTTRPAFAPIPEAPYVVINARPERVTQVADSLLRGDTIGVRFVNLRDAFLETNAFAGTHRLRLWADPDVPGKSRVTIEAVYRPTEDPSRTRRDLERAAPPGSAGQLRAEQLLAALKDKLGVTTY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193725_1000001

Overview

Ecosystem & Geography

Associated Families

Sequences