Scaffold Ga0193713_1009459

Overview

Basic Information

• Taxon OID: 3300019882
• Scaffold ID: Ga0193713_1009459
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2975
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9827
  • Long. (^o): -107.0102
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017686	Metagenome / Metatranscriptome	239	Y
F055303	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193713_10094592	F017686	GAGG	MADTQSAAAAKLPPTMPSPIPDETARLFQLALHDVVRSSALSMAELRECVKACVCFLRDSQIGPAQMIISMKACAKEGNRRYPMVLNEHELSNADFLMEQIIKWSIVEYYKDA
Ga0193713_10094593	F055303	N/A	MSRSEDGKPHPLPEELDRALRRATDRTIVALTSLRKAVRQHVHDERERGTTLSEIELELGVIIARVLKDAEGRDSADGERDTLATQMLKWSKGFYNQQD