Scaffold Ga0193723_1000837

Overview

Basic Information

• Taxon OID: 3300019879
• Scaffold ID: Ga0193723_1000837
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12159
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.987
  • Long. (^o): -107.0038
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036404	Metagenome / Metatranscriptome	170	N
F044401	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193723_10008378	F044401	N/A	MKRIYLGALVSFAVCQFGLAAGNDSLPPPVSDKIYTFQQIEQQKLDLSGKIVRIEIGSLLGDGKSHLPDGSLRYIAKDTSKGTMPFGQVAFPPQGLRNGALPDDLKKSPTAFYFRVHLSPGPNAAALCIAVGRQVSVANSKAIYSW
Ga0193723_10008379	F036404	N/A	HMVVDLQLSSYDNKIPPAECHYDRYPGKVERIRLPDGGTFARKEGGKWLESEDWGESGKPVKSTRSNQLNVFAGYAVIPLKSKGESRDKSQGATVVRLIDQHKDKEGDEELVFETGREHQTNVNYPTYTFLRYKNADPDDAVLYKFSGPIYSQGGTKVQLDARYGYLIAVKMNVNVVTPPPTSSPQSSVAPSVSASPSARQH