Scaffold Ga0193715_1005342

Overview

Basic Information

• Taxon OID: 3300019878
• Scaffold ID: Ga0193715_1005342
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2759
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9355
  • Long. (^o): -106.9424
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001851	Metagenome / Metatranscriptome	626	Y
F005764	Metagenome / Metatranscriptome	391	Y
F023459	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193715_10053424	F005764	GAGG	MEPVLYSLQAVLRGALILGLSLTVFAQIPATQETFGFPSGRKGPDFPFTVLPPALVRHPPFEFRGIRIGDEMMAAERKFLALKVPSLSSKPGLCGSDGMNRIDTCTDVLDTGEYVNMTMLDQRVAQLYVSTDRRTRGHSYNSYVLALATKYGIPDKRETKYYHNGIETESSGKRLRWLNGDQYMQGSEIDRAITIGSRALDAEIAEQEHIYERN
Ga0193715_10053425	F001851	AGGAG	MSVTSISFAVLIVLFAILLLYTMRKLKPQIAGFGSQRMCSSCGLITSRLKPRCLECGSLLQR
Ga0193715_10053426	F023459	AGGAG	MLVAEKSAGLSWVSVRDRLPFDGHECALIYRSPNSSDLKRAIGCRLHGNWEIQNCALVNCDVRAWLKLPSTPSYI