Scaffold Ga0193722_1000054

Overview

Basic Information

• Taxon OID: 3300019877
• Scaffold ID: Ga0193722_1000054
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25646
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.987
  • Long. (^o): -107.0038
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F006999	Metagenome / Metatranscriptome	360	Y
F014334	Metagenome / Metatranscriptome	264	Y
F015372	Metagenome	255	Y
F078484	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193722_100005410	F015372	N/A	MDDIQKRADDKAWDEKQNRRISDANRRIEDGVTGEALAALHGLHVSPDDEGSYDVDEMSNVADQETLRDKIISRLIQIGDTISRNRDLPDDVRQRWTATLQEIYASDAKSVTLLRDLRREINSWEEIDPQLEFSLVYGAIDAVATVIEIYQRRFNTR
Ga0193722_100005419	F014334	N/A	MNMKITSILTGILLATAAFLLAQALSPNKRADLSASPSQPRSDDVGTSSTEACDPQIIAKAVKGYTCVVKAKGGSVAWRVEAVISTESRTFRVMKDLKSGLCVSDDMGKHSHEFAVKQNLCDSPDYSSQTGNLTSVSWRLPSGYPRSLNGKNGFPNHDSDFVILEDDGIRQVIPGISSKYFVSSSEAGKPADYISYGFDGEFGGIDAGCNGNGMASLRCVAQ
Ga0193722_100005426	F000268	GAG	MLMRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIKSFTVSTRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKDGTMIFPDSFDR
Ga0193722_10000544	F006999	GAG	VIQFNTNMKRLALLTLVILMPALLRADEKDTMLQALGQYEQAWRSTTPCELTSNACQTREIFLLQQAAQAADRYLTTPDAKESPWRSVAQSVIKFSQARGEAYAKYIQLRSQDPDAAGKAYHSVVDSLEGDFNSTLKVTIRNDENSHEIAQRFGLVDF
Ga0193722_10000546	F078484	GGAGG	MNIKFLLFGRDEIENSLVRFADRKISEQHRAERRLAEQRTTRYRFQARKSCVADARSYRVARRFPVLAVAQFDWKALIPTRRTYLFGIGWLKKPRNDQHKHWLTAKQAS