Scaffold Ga0193700_1005702

Overview

Basic Information

• Taxon OID: 3300019873
• Scaffold ID: Ga0193700_1005702
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1921
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9203
  • Long. (^o): -106.9486
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027039	Metagenome / Metatranscriptome	196	N
F052712	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193700_10057022	F027039	GAGG	MSLQETASQVGRRATKFCPANVQKIKDWVAEGISREEIAKSLDVTVGSLQVTCSRLGISLRMPKMFERRRRVESRPYLPNHPPMVGHIGPKPQYLRFQIILEHDGLQRVTDVPLAGLDIARVALEAEAQNLGMTQLLTQAVTTAIKKDMIEKILREPSPDPAPQAVPESP
Ga0193700_10057024	F052712	GGGGG	VSATIIASLLVGAVLALRFKVFILVPTILAAWAVLTGIGLAWEITAAWIALEIAVVTTALQVGYLSPLLLEGLAIPPS