Scaffold Ga0193754_1004163

Overview

Basic Information

• Taxon OID: 3300019872
• Scaffold ID: Ga0193754_1004163
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1392
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9763
  • Long. (^o): -107.0041
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F002111	Metagenome / Metatranscriptome	592	Y
F008327	Metagenome / Metatranscriptome	335	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193754_10041632	F008327	AGGAG	MSFPKGDSPEDVRQFYLYLNGHQETTHPVQTWHVDWLSLAWLWGFVIVLICVLLLWVKQYRTTRQRTGIYPVDSFGGWTTEGAGPATVFFLLFTAVIVVFAIVLIVGHIVYGQKF
Ga0193754_10041633	F002111	AGAAG	MAAIAAPPFVSYSSLTEVEIPAAQWPTVYSSLQALKGHVQEYPGCQSFDVFVRAEGAGDVLVHCYTTWDTPGQLEVFLERGYTFERLLADIGSGLEATRSLVMEKVF
Ga0193754_10041634	F000280	AGG	MAQDPKRPRPARPLVGYRDIGEDDVRHSRSALRRAWIVLAILIVFYLAWTLTIYFLEPGL