Scaffold Ga0206388_1001379

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0206388_1001379

Scaffold Ga0206388_1001379

Overview

Basic Information
Taxon OID	3300019861 Open in IMG/M
Scaffold ID	Ga0206388_1001379 Open in IMG/M
Source Dataset Name	Lab enriched sediment microbial communities from oil refinery in Oklahoma, USA - DGG1A 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Toronto
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1418
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Anaerobic Enrichment Culture → Metagenomes From Methanogenic Benzene-Degrading Culture

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	36.0	Long. (^o)	-97.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101218	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206388_10013793	F101218	GGAGG	MSKQGPKPDLPRVKEPPPLPSLDELIAESRALGWDDLADSMEKLRYLETPKGQEALERREKRLSRL

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