Scaffold Ga0137408_1341237

Overview

Basic Information

• Taxon OID: 3300019789
• Scaffold ID: Ga0137408_1341237
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10161
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014559	Metagenome / Metatranscriptome	262	Y
F075165	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137408_13412377	F014559	AGGA	MAICWLLNVTEFGVGWLLLVADVRMLPAYYALVGAIGLLQVGYVVPIWRLLRRKGKPQTARGMMLAAGITAFLNVVLALVIFRRL
Ga0137408_13412378	F075165	GAGG	MILAQPLNSITMETHDSVSTMTDAYAQKAVIIAREFNARLDYSENSLMELEGILAQLALDLPPGGPATDELTEVCKMWGCYFGEVVRRRFGGDWSIETYPGKQFATLTLNVSGNKLFPSMKIHRRLTEGEADNVWSFYKMVKAKLEPVQKTSSPS