Scaffold Ga0182028_1421582

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182028_1421582

Scaffold Ga0182028_1421582

Overview

Basic Information
Taxon OID	3300019788 Open in IMG/M
Scaffold ID	Ga0182028_1421582 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2253
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038954	Metagenome	164	N
F093143	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182028_14215824	F093143	GGGGG	MSASHATIAAGYISMAEQELEQDLASTMKTLLDREPNIAHRALVFVLQDECLVTFEKADSYIKSHREV
Ga0182028_14215825	F038954	GGAGG	MGSFVFIVLVLGFIWIVRGLAKAEQRRQMARQAGFTEEEINRIDRKNLAIQTFLAGLIVGPATFIGMIFLTCLLVWVLFPVGLLATLVLWSLYLKWLRSFYRGN

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