Scaffold Ga0182028_1348528

Overview

Basic Information

• Taxon OID: 3300019788
• Scaffold ID: Ga0182028_1348528
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2653
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069504	Metagenome	124	Y
F091663	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182028_13485282	F091663	GGA	MPVERNQRGGSPIDRVRQQTERRALEQAKRVPWKRLAEAADKHTDWQVFTLWLRAVVEAAGSIPAMVAQEMESRTPRLLERIRPDVEEVAKNGDGPGTRIWQDVSRWAEMNVFMGAKRAGWLDAVRYYSSMSLRCMKVWSHWEDIDRRWRAARRNTFQTTRSGSAKLRPWSGCQIPTA
Ga0182028_13485283	F069504	AGGA	MREVKRWTEAQTTALLGALGADATIESIAARTGHSVKSVRAKIARLDYAVHEVHGFAVFTVNSLADLLRVTPRQIRRWKERGWLETKDRRIPEECLGQFLRAHPDRIPFDSLRREDQVFLVDIGFPCQEAATFKKNVREILDGIGRQRKPRRPLRRDNVTAIGLGRSEEGTDGGALLLTAPQSMRQQPLAIPQMKAGDPDIRQARYRDNATQSSA