NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182028_1055393

Scaffold Ga0182028_1055393


Overview

Basic Information
Taxon OID3300019788 Open in IMG/M
Scaffold IDGa0182028_1055393 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1175
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016695Metagenome / Metatranscriptome245Y
F045493Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0182028_10553931F045493N/ATQRIWPRVRVLTSGAPRLFFNRVWSSVPEVREDLLRCAGFKHVIIAEEGALDVDDLKTRVSTPIHVLTLSTAQSVPEGILVNCRRVQRAKCPGN
Ga0182028_10553932F016695N/AMHYNQIIAVLLKHGFAEGRLIANSKSGYCKRHRSHFVVFNAQVCNIRGRLLKQADLDLTLDGEKLTQAARAAGENFYVLYENDPSPFWKPGSIPMPRVLRDAVWWTRIHREDEDLFLPMNSGLLERKRGRLRCSLGRWQNRPAYSVDLRDNPAWGSGRNLSGAIVQVLGHPPKGLRPTEKDEVFTAEISKTRGRPVRPVFYHRVGLLDYVWFSHGAAVPAILYDHTVRRLDSVRFTWHRDSAAIHLRQAGAVAGLF
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