Scaffold Ga0181359_1052461

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1052461
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1571
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052598	Metagenome	142	N
F054041	Metagenome / Metatranscriptome	140	Y
F058151	Metagenome / Metatranscriptome	135	Y
F074407	Metagenome / Metatranscriptome	119	Y
F099316	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10524612	F074407	N/A	MNKKIKALAIEAGLYVDFNGEPWPRNMTGEDIEGAYEKFALLLIDECAKKVDKVRRQGGWFYGEIIRKEFGFYDKKSS
Ga0181359_10524614	F099316	GAGG	MWRIRKMGDENGYIVRNKELAVQLLDQFNRKGGIWEMVEITEYVLGDPMEQ
Ga0181359_10524615	F058151	GAGG	MELQDKTSISTLVDNVPTDVSGKWVKKEELYPFASAVADYVLTRVEKNIDDSNL
Ga0181359_10524616	F052598	GAG	MIPTFKLTVTDEFHSDFVYETNDKEEVLDRVALWLSQLDNTPIYNLNIEVN
Ga0181359_10524617	F054041	GAGG	MTVIFTCGHKAEDEEDGFTISTKAYTRENNRAVDYRTVCNKCYQVYEMEDLILLGEADEAKWLDGE